Lesson 7: Profile Analysis

On-line GCG Manual

PSIBLAST

Prosite Profiles

Meme and a Motifsearch-like program called Mast

Blocks database

PFAM database

SMART database

Interpro: Combined protein sequence and motif site

CD-Search: Searches libraries of profiles

DART: Gives block domain diagrams of protein and its homologs

SUPERFAMILY: Classifies Proteins According to Superfamily

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