Sequence Analysis Web Sites

ISAAC

Internet Sequence Analysis Algorithm Checklist


Here is a list of sequence analysis web sites that I have found to be useful.
The list is keyed to the lessons in my Biological Sequence Analysis Course.

Lesson 1: Unix

Lesson 2: Sequence Analysis File Formats and Databases

Lesson 3: Sequence Comparison and Alignment

Lesson 4: Database Searching by Sequence

Lesson 5: Database Searching by Keyword and Motif

Lesson 6: Multiple Sequence Alignment

Lesson 7: Profile Methods

Lesson 8: Mapping, Primer Design, and RNA Secondary Structure Prediction

Lesson 9: Genomic Analysis

Lesson 10: Protein Secondary Structure Prediction

Lesson 11: Molecular Systematics

Lesson 12: Protein Tertiary Structure Prediction

Lesson 13: Functional Genomics: Microarrays and Pathways

General: Nucleic Acids Research Web Server Issue

General: Nucleic Acids Research Database Issue


Richard Friedman

Last modified: December 31, 2007